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VX-222 (VCH-222, Lomibuvir)

NNI of HCV RNA polymerase CAS# 1026785-59-0

VX-222 (VCH-222, Lomibuvir)

2D Structure

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VX-222 (VCH-222, Lomibuvir)

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Chemical Properties of VX-222 (VCH-222, Lomibuvir)

Cas No. 1026785-59-0 SDF Download SDF
PubChem ID 24798764 Appearance Powder
Formula C25H35NO4S M.Wt 445.6
Type of Compound N/A Storage Desiccate at -20°C
Synonyms VCH-222
Solubility DMSO : ≥ 32 mg/mL (71.81 mM)
*"≥" means soluble, but saturation unknown.
Chemical Name 5-(3,3-dimethylbut-1-ynyl)-3-[(4-hydroxycyclohexyl)-(4-methylcyclohexanecarbonyl)amino]thiophene-2-carboxylic acid
SMILES CC1CCC(CC1)C(=O)N(C2CCC(CC2)O)C3=C(SC(=C3)C#CC(C)(C)C)C(=O)O
Standard InChIKey WPMJNLCLKAKMLA-UHFFFAOYSA-N
Standard InChI InChI=1S/C25H35NO4S/c1-16-5-7-17(8-6-16)23(28)26(18-9-11-19(27)12-10-18)21-15-20(13-14-25(2,3)4)31-22(21)24(29)30/h15-19,27H,5-12H2,1-4H3,(H,29,30)
General tips For obtaining a higher solubility , please warm the tube at 37 ℃ and shake it in the ultrasonic bath for a while.Stock solution can be stored below -20℃ for several months.
We recommend that you prepare and use the solution on the same day. However, if the test schedule requires, the stock solutions can be prepared in advance, and the stock solution must be sealed and stored below -20℃. In general, the stock solution can be kept for several months.
Before use, we recommend that you leave the vial at room temperature for at least an hour before opening it.
About Packaging 1. The packaging of the product may be reversed during transportation, cause the high purity compounds to adhere to the neck or cap of the vial.Take the vail out of its packaging and shake gently until the compounds fall to the bottom of the vial.
2. For liquid products, please centrifuge at 500xg to gather the liquid to the bottom of the vial.
3. Try to avoid loss or contamination during the experiment.
Shipping Condition Packaging according to customer requirements(5mg, 10mg, 20mg and more). Ship via FedEx, DHL, UPS, EMS or other couriers with RT, or blue ice upon request.

Biological Activity of VX-222 (VCH-222, Lomibuvir)

DescriptionVX-222 is a potent and selective inhibitor of HCV RNA-dependent RNA polymerase with IC50 value of 0.94-1.2 μM.
TargetsHCV RNA-dependent RNA polymerase    
IC500.94-1.2 μM     

Protocol

Kinase experiment [1]:

Inhibitory activities

Huh7.5 cells harboring replicons were trypsinized and plated into 48-well plates at 40,000 cells/well. The next day the medium was changed and VX-222 was added to the cells at seven different concentrations, each pair of which differed by 3- or 10-fold dilutions in 200 μl complete medium with triplicates. After 48 h, total RNA was extracted from replicon cells using the TRIzol reagent, and viral RNAs were quantified by realtime reverse transcription-PCR (RT-PCR). First-strand cDNA synthesis used 1g of total RNA along with Moloney murine leukemia virus and 4 M randomized 9-nucleotide (nt) primer mix. RT-PCR used the Bio-Rad IQ SYBR green kit, and primers were HCV 5’-UTRsense (5’-AGC CAT GGC GTT AGT ATG AGT GTC-3’) and 5’-UTRanti (5’-ACA AGG CCT TTC GCG ACC CAA C-3’). Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) was detected using the sense and antisense oligonucleotides 5’-GAGTCAACGGATTTG GTC GT-3’ and 5’-TGG GAT TTC CAT TGA TGA CA-3’, respectively. All reaction mixtures were heated to 95℃ for 10 min, followed by 40 cycles of PCR of 15 s at 95℃, 20 s at 55℃, and 30 s at 72℃. The fold change and percent change of each group were compared to values for controls. The effective VX-222 concentration that reduced HCV RNA replicon level by 50% (EC50) was calculated with GraphPad Prism software by nonlinear regression analysis with log curve fitting.

Cell experiment [2]:

Cell lines

HCV genotype 1b (HCV-1b) mADE replicon cells.

Preparation method

Soluble in DMSO > 10 mM. General tips for obtaining a higher concentration: Please warm the tube at 37℃ for 10 minutes and/or shake it in the ultrasonic bath for a while. Stock solution can be stored below -20℃ for several months.

Reacting condition

1 μM; 6 days.

Applications

In HCV replicon cells, VX-222 dose-dependently increases IFN-β promoter activity by 5.0-fold and inhibits HCV activity with EC50 and EC90 values of 0.3 and 12 nM, respectively. Also, VX-222 rescues the Sendai virus-activated Rig-I pathway due to the inhibition of viral replication.

Human experiment [3]:

Patients

Patients with genotype 1 hepatitis C virus infection.

Dosage form

100 or 400 mg twice daily; VX-222+telaprevir ('DUAL' regimen), with ribavirin ('TRIPLE' regimen), or with peginterferon+ribavirin ('QUAD' regimen); 12 weeks.

Application

VX-222 (100 or 400 mg twice daily) is well tolerated. Patients exhibit sustained virologic response by 67%, 79% and 90% for TRIPLE (VX-222 400 mg twice daily) and QUAD (VX-222 100 and 400 mg twice daily), respectively.

Other notes

Please test the solubility of all compounds indoor, and the actual solubility may slightly differ with the theoretical value. This is caused by an experimental system error and it is normal.

References:

[1]. Yi G, Deval J, Fan B, et al. Biochemical study of the comparative inhibition of hepatitis C virus RNA polymerase by VX-222 and filibuvir. Antimicrob Agents Chemother, 2012, 56(2): 830-837.

[2]. Kalkeri G, Lin C, Gopilan J, et al. Restoration of the activated Rig-I pathway in hepatitis C virus (HCV) replicon cells by HCV protease, polymerase, and NS5A inhibitors in vitro at clinically relevant concentrations. Antimicrob Agents Chemother, 2013, 57(9): 4417-4426.

[3]. Di Bisceglie AM, Sulkowski M, Gane E, et al. VX-222, a non-nucleoside NS5B polymerase inhibitor, in telaprevir-based regimens for genotype 1 hepatitis C virus infection. Eur J Gastroenterol Hepatol, 2014, 26(7): 761-773.

VX-222 (VCH-222, Lomibuvir) Dilution Calculator

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Preparing Stock Solutions of VX-222 (VCH-222, Lomibuvir)

1 mg 5 mg 10 mg 20 mg 25 mg
1 mM 2.2442 mL 11.2208 mL 22.4417 mL 44.8833 mL 56.1041 mL
5 mM 0.4488 mL 2.2442 mL 4.4883 mL 8.9767 mL 11.2208 mL
10 mM 0.2244 mL 1.1221 mL 2.2442 mL 4.4883 mL 5.6104 mL
50 mM 0.0449 mL 0.2244 mL 0.4488 mL 0.8977 mL 1.1221 mL
100 mM 0.0224 mL 0.1122 mL 0.2244 mL 0.4488 mL 0.561 mL
* Note: If you are in the process of experiment, it's necessary to make the dilution ratios of the samples. The dilution data above is only for reference. Normally, it's can get a better solubility within lower of Concentrations.

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Background on VX-222 (VCH-222, Lomibuvir)

VX-222, a derivative of thiophene-2-carboxylic acid, is a potent non-nucleoside inhibitor (NNI) of the hepatitis C virus (HCV) RNA polymerase, an enzyme regulating RNA synthesis by a de novo-initiated mechanism or by extension from a primed template, that binds to the thumb II allosteric pocket of HCV RNA-dependent RNA polymerase with hydrophobical interactions between the 4-methycyclohexanoyl group of VX-222 and L412, M423 and I482 of thumb II domain. VX-222 exhibits preferential inhibition against primer-dependent RNA synthesis rather than de novo-initiated RNA synthesis with 50% inhibition concentration IC50 values ranging from 0.011 to >5 μM in five different templates of RNA synthesis.

Reference

Yi G, Deval J, Fan B, Cai H, Soulard C, Ranjith-Kumar CT, Smith DB, Blatt L, Beigelman L, Kao CC. Biochemical study of the comparative inhibition of hepatitis C virus RNA polymerase by VX-222 and filibuvir. Antimicrob Agents Chemother. 2012 Feb;56(2):830-7. doi: 10.1128/AAC.05438-11. Epub 2011 Dec 5.

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References on VX-222 (VCH-222, Lomibuvir)

Discovery of Novel Allosteric HCV NS5B Inhibitors. 2. Lactam-Containing Thiophene Carboxylates.[Pubmed:28197321]

ACS Med Chem Lett. 2017 Jan 31;8(2):251-255.

Lomibuvir (1) is a non-nucleoside, allosteric inhibitor of the hepatitis C virus NS5B polymerase with demonstrated clinical efficacy. Further development efforts within this class of inhibitor focused on improving the antiviral activity and physicochemical and pharmacokinetic properties. Recently, we reported the development of this series, leading to compound 2, a molecule with comparable potency and an improved physicochemical profile relative to 1. Further exploration of the amino amide-derived side chain led to a series of lactam derivatives, inspired by the X-ray crystal structure of related thiophene carboxylate inhibitors. This series, exemplified by 12f, provided 3-5-fold improvement in potency against HCV replication, as measured by replicon assays. The synthesis, structure-activity relationships, in vitro ADME characterization, and in vivo evaluation of this novel series are discussed.

Discovery of Novel Thiophene-Based, Thumb Pocket 2 Allosteric Inhibitors of the Hepatitis C NS5B Polymerase with Improved Potency and Physicochemical Profiles.[Pubmed:27366941]

J Med Chem. 2016 Jul 14;59(13):6293-302.

The hepatitis C viral proteins NS3/4A protease, NS5B polymerase, and NS5A are clinically validated targets for direct-acting antiviral therapies. The NS5B polymerase may be inhibited directly through the action of nucleosides or nucleotide analogues or allosterically at a number of well-defined sites. Herein we describe the further development of a series of thiophene carboxylate allosteric inhibitors of NS5B polymerase that act at the thumb pocket 2 site. Lomibuvir (1) is an allosteric HCV NS5B inhibitor that has demonstrated excellent antiviral activity and potential clinical utility in combination with other direct acting antiviral agents. Efforts to further explore and develop this series led to compound 23, a compound with comparable potency and improved physicochemical properties.

Discontinued drugs in 2012 - 2013: hepatitis C virus infection.[Pubmed:25384989]

Expert Opin Investig Drugs. 2015 Feb;24(2):239-51.

INTRODUCTION: Hepatitis C virus (HCV) chronically infects about 150 million people worldwide. Antiviral treatment can stop and even reverse the progression of the disease. Several antivirals have been developed. However, about 10,000 compounds are tested for each drug that eventually reaches the market. It would be useful to learn from these failures, for example, by reporting the candidate drugs that were discontinued and the reason for discontinuation. AREAS COVERED: This article focuses on the anti-HCV drug candidates discontinued between 1 January 2012 and 1 January 2014. EXPERT OPINION: In detail, 17 drugs were discontinued. Of these: 10 were NS5B inhibitors, 3 were NS5A inhibitors, 2 were immunostimulants, 1 was a therapeutic and prophylactic vaccine and 1 an NS3 inhibitor. Only 3 candidates were discontinued in the preclinical phase, and 14 were discontinued during clinical development (8 in Phase II and 6 in Phase I). Most discontinuations were attributed to corporate strategic decisions. The authors believe that learning from HCV drug development failures will help pharmaceutical companies and researchers to develop better strategies for the future. It is therefore important that this information is made available.

In vitro antiviral activity and preclinical and clinical resistance profile of miravirsen, a novel anti-hepatitis C virus therapeutic targeting the human factor miR-122.[Pubmed:25385103]

Antimicrob Agents Chemother. 2015 Jan;59(1):599-608.

Miravirsen is a beta-D-oxy-locked nucleic acid-modified phosphorothioate antisense oligonucleotide targeting the liver-specific microRNA-122 (miR-122). Miravirsen demonstrated antiviral activity against hepatitis C virus (HCV) genotype 1b replicons with a mean 50% effective concentration (EC50) of 0.67 muM. No cytotoxicity was observed up to the highest concentration tested (>320 muM) in different cell culture models, yielding a therapeutic index of >/= 297. Combination studies of miravirsen with interferon alpha2b, ribavirin, and nonnucleoside (VX-222) and nucleoside (2'-methylcytidine) inhibitors of NS5B, NS5A (BMS-790052), or NS3 (telaprevir) indicated additive interactions. Miravirsen demonstrated broad antiviral activity when tested against HCV replicons resistant to NS3, NS5A, and NS5B inhibitors with less than 2-fold reductions in susceptibility. In serial passage studies, an A4C nucleotide change was observed in the HCV 5' untranslated region (UTR) from cells passaged in the presence of up to 20 muM (40-fold the miravirsen EC50 concentration) at day 72 of passage but not at earlier time points (up to 39 days of passage). Likewise, a C3U nucleotide change was observed in the HCV 5'UTR from subjects with viral rebound after the completion of therapy in a miravirsen phase 2 clinical trial. An HCV variant constructed to contain the A4C change was fully susceptible to miravirsen. A C3U HCV variant demonstrated overall reductions in susceptibility to miravirsen but was fully susceptible to all other anti-HCV agents tested. In summary, miravirsen has demonstrated broad antiviral activity and a relatively high genetic barrier to resistance. The identification of nucleotide changes associated with miravirsen resistance should help further elucidate the biology of miR-122 interactions with HCV. (The clinical trial study has been registered at ClinicalTrials.gov under registration no. NCT01200420).

Biophysical Mode-of-Action and Selectivity Analysis of Allosteric Inhibitors of Hepatitis C Virus (HCV) Polymerase.[Pubmed:28621755]

Viruses. 2017 Jun 16;9(6). pii: v9060151.

Allosteric inhibitors of hepatitis C virus (HCV) non-structural protein 5B (NS5B) polymerase are effective for treatment of genotype 1, although their mode of action and potential to inhibit other isolates and genotypes are not well established. We have used biophysical techniques and a novel biosensor-based real-time polymerase assay to investigate the mode-of-action and selectivity of four inhibitors against enzyme from genotypes 1b (BK and Con1) and 3a. Two thumb inhibitors (lomibuvir and filibuvir) interacted with all three NS5B variants, although the affinities for the 3a enzyme were low. Of the two tested palm inhibitors (dasabuvir and nesbuvir), only dasabuvir interacted with the 1b variant, and nesbuvir interacted with NS5B 3a. Lomibuvir, filibuvir and dasabuvir stabilized the structure of the two 1b variants, but not the 3a enzyme. The thumb compounds interfered with the interaction between the enzyme and RNA and blocked the transition from initiation to elongation. The two allosteric inhibitor types have different inhibition mechanisms. Sequence and structure analysis revealed differences in the binding sites for 1b and 3a variants, explaining the poor effect against genotype 3a NS5B. The indirect mode-of-action needs to be considered when designing allosteric compounds. The current approach provides an efficient strategy for identifying and optimizing allosteric inhibitors targeting HCV genotype 3a.

Description

VX-222 (VCH-222) is a novel, potent and selective inhibitor of HCV polymerase with IC50 of 0.94-1.2 μM, 15.3-fold less effective for mutant M423T, and 108-fold less effective for mutant I482L.

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